Although there are many overlapping concepts in the below tutorials, they are arranged in order of complexity of application. You might like to start at the beginning and work your way through. We also suggest using the materials of a past ProtoMS workshop as a guide - you should be able to find the latest event easily via our website
In all tutorials it is assumed that $PROTOMSHOME
is set to the installation path of ProtoMS
A visualization software is required in most tutorials to asses results of simulations as well as certain stages of set-up. Throughout the tutorials, VMD is recommemded. Nevertheless, please feel free to use the software of your choice.