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DomainFinder User's Manual

Konrad Hinsen, `hinsen@cnrs-orleans.fr`

v2.0, 2005-5-12

DomainFinder is an interactive program for the determination and characterization of dynamical domains in proteins. Its key features are computational efficiency, ease of use, and export of results for visualization and further analysis.

1. Introduction

2. Theoretical basis

3. Preparing your protein structures

4. Normal mode based analysis

5. Conformation based analysis

6. Deformation analysis

7. Domain analysis

8. User interface features

9. Literature

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