mgkit.mappings.cazy module¶
Module containing classes and functions to deal with CaZy data
-
mgkit.mappings.cazy.
CAZY_FAMILIES
= {'CBM': 'Carbohydrate-Binding Module', 'CE': 'Carbohydrate Esterase', 'GH': 'Glycoside Hydrolase', 'GT': 'GlycosylTransferase', 'PL': 'Polysaccharide Lyase'}¶ CaZy families
-
class
mgkit.mappings.cazy.
Kegg2CazyMapper
(fname=None)[source]¶ Bases:
mgkit.kegg.KeggMapperBase
Class holding mappings KOs->CaZy
-
columns_string
= 'database(cazy)'¶
-
query_string
= 'database:(type:ko {0}) AND database:(type:cazy)'¶
-