A B C D E F G H I J K L M N O P R S T U V X Y Z

C

c2 - Static variable in class org.simulator.math.odes.RosenbrockSolver
Constants for solving
c21 - Static variable in class org.simulator.math.odes.RosenbrockSolver
Constants for solving
c3 - Static variable in class org.simulator.math.odes.RosenbrockSolver
Constants for solving
c31 - Static variable in class org.simulator.math.odes.RosenbrockSolver
Constants for solving
c32 - Static variable in class org.simulator.math.odes.RosenbrockSolver
Constants for solving
c4 - Static variable in class org.simulator.math.odes.RosenbrockSolver
Constants for solving
c41 - Static variable in class org.simulator.math.odes.RosenbrockSolver
Constants for solving
c42 - Static variable in class org.simulator.math.odes.RosenbrockSolver
Constants for solving
c43 - Static variable in class org.simulator.math.odes.RosenbrockSolver
Constants for solving
c51 - Static variable in class org.simulator.math.odes.RosenbrockSolver
Constants for solving
c52 - Static variable in class org.simulator.math.odes.RosenbrockSolver
Constants for solving
c53 - Static variable in class org.simulator.math.odes.RosenbrockSolver
Constants for solving
c54 - Static variable in class org.simulator.math.odes.RosenbrockSolver
Constants for solving
c61 - Static variable in class org.simulator.math.odes.RosenbrockSolver
Constants for solving
c62 - Static variable in class org.simulator.math.odes.RosenbrockSolver
Constants for solving
c63 - Static variable in class org.simulator.math.odes.RosenbrockSolver
Constants for solving
c64 - Static variable in class org.simulator.math.odes.RosenbrockSolver
Constants for solving
c65 - Static variable in class org.simulator.math.odes.RosenbrockSolver
Constants for solving
ceiling(ASTNodeObject, double) - Method in class org.simulator.sbml.astnode.ASTNodeInterpreterWithTime
 
ceiling(ASTNode) - Method in class org.simulator.sbml.ASTNodeInterpreter
 
ceiling(ASTNode) - Method in class org.simulator.sbml.EfficientASTNodeInterpreter
 
changePriority(double) - Method in class org.simulator.sbml.EventInProcess
Change the priority.
checkSolution(double[]) - Method in class org.simulator.math.odes.AbstractDESSolver
Checks whether or not the given current state contains Double.NaN values.
checkSolution(double[], double[]) - Method in class org.simulator.math.odes.AbstractDESSolver
 
children - Variable in class org.simulator.sbml.astnode.ASTNodeObject
 
clearAssignments() - Method in class org.simulator.sbml.EventInProcess
 
clearRuleObjects() - Method in class org.simulator.sbml.EventInProcess
 
clone() - Method in class org.simulator.math.odes.AbstractDESSolver
 
clone() - Method in class org.simulator.math.odes.AdamsBashforthSolver
 
clone() - Method in class org.simulator.math.odes.AdamsMoultonSolver
 
clone() - Method in interface org.simulator.math.odes.DESSolver
 
clone() - Method in class org.simulator.math.odes.DormandPrince54Solver
 
clone() - Method in class org.simulator.math.odes.DormandPrince853Solver
 
clone() - Method in class org.simulator.math.odes.EulerMethod
 
clone() - Method in class org.simulator.math.odes.FirstOrderSolver
 
clone() - Method in class org.simulator.math.odes.GraggBulirschStoerSolver
 
clone() - Method in class org.simulator.math.odes.HighamHall54Solver
 
clone() - Method in class org.simulator.math.odes.RosenbrockSolver
 
clone() - Method in class org.simulator.math.odes.RungeKutta_EventSolver
 
compartmentIndex - Variable in class org.simulator.sbml.astnode.RuleObject
 
CompartmentOrParameterValue - Class in org.simulator.sbml.astnode
 
CompartmentOrParameterValue(ASTNodeInterpreterWithTime, ASTNode, Symbol, ValueHolder, int) - Constructor for class org.simulator.sbml.astnode.CompartmentOrParameterValue
 
compartmentPosition - Variable in class org.simulator.sbml.astnode.SpeciesValue
 
compile(double, int, String) - Method in class org.simulator.sbml.astnode.ASTNodeInterpreterWithTime
 
compile(double, String) - Method in class org.simulator.sbml.astnode.ASTNodeInterpreterWithTime
 
compile(CallableSBase) - Method in class org.simulator.sbml.ASTNodeInterpreter
 
compile(Compartment) - Method in class org.simulator.sbml.ASTNodeInterpreter
 
compile(double, int, String) - Method in class org.simulator.sbml.ASTNodeInterpreter
 
compile(double, String) - Method in class org.simulator.sbml.ASTNodeInterpreter
 
compile(int, String) - Method in class org.simulator.sbml.ASTNodeInterpreter
 
compile(String) - Method in class org.simulator.sbml.ASTNodeInterpreter
 
compile(CallableSBase) - Method in class org.simulator.sbml.EfficientASTNodeInterpreter
 
compile(Compartment) - Method in class org.simulator.sbml.EfficientASTNodeInterpreter
 
compile(double, int, String) - Method in class org.simulator.sbml.EfficientASTNodeInterpreter
 
compile(double, String) - Method in class org.simulator.sbml.EfficientASTNodeInterpreter
 
compile(int, String) - Method in class org.simulator.sbml.EfficientASTNodeInterpreter
 
compile(String) - Method in class org.simulator.sbml.EfficientASTNodeInterpreter
 
compileBoolean(CallableSBase, double) - Method in class org.simulator.sbml.astnode.ASTNodeInterpreterWithTime
 
compileBoolean(double) - Method in class org.simulator.sbml.astnode.ASTNodeObject
 
compileBoolean(ASTNode) - Method in class org.simulator.sbml.EfficientASTNodeInterpreter
 
compileBoolean(double) - Method in class org.simulator.sbml.SpecialASTNodeValue
 
compileDouble(String, double) - Method in class org.simulator.sbml.astnode.ASTNodeInterpreterWithTime
 
compileDouble(CallableSBase, double) - Method in class org.simulator.sbml.astnode.ASTNodeInterpreterWithTime
 
compileDouble(double) - Method in class org.simulator.sbml.astnode.ASTNodeObject
 
compileDouble(double) - Method in class org.simulator.sbml.astnode.LocalParameterValue
 
compileDouble(ASTNode) - Method in class org.simulator.sbml.EfficientASTNodeInterpreter
 
compileDouble(double) - Method in class org.simulator.sbml.SpecialASTNodeValue
 
compileString(ASTNodeObject) - Method in class org.simulator.sbml.astnode.ASTNodeInterpreterWithTime
 
compileString(ASTNode) - Method in class org.simulator.sbml.astnode.ASTNodeInterpreterWithTime
 
computeBooleanValue() - Method in class org.simulator.sbml.astnode.ASTNodeObject
 
computeBooleanValue() - Method in class org.simulator.sbml.astnode.FunctionValue
 
computeChange(DESystem, double[], double, double, double[], boolean) - Method in class org.simulator.math.odes.AbstractDESSolver
Computes the change for a given system at the current time with the current setting for the integration step size.
computeChange(DESystem, double[], double, double, double[], boolean) - Method in class org.simulator.math.odes.EulerMethod
 
computeChange(DESystem, double[], double, double, double[], boolean) - Method in class org.simulator.math.odes.FirstOrderSolver
 
computeChange(DESystem, double[], double, double, double[], boolean) - Method in class org.simulator.math.odes.RosenbrockSolver
 
computeChange(DESystem, double[], double, double, double[], boolean) - Method in class org.simulator.math.odes.RungeKutta_EventSolver
 
computeChange(double, double[], double[]) - Method in class org.simulator.sbml.astnode.StoichiometryObject
 
computeDelayedValue(double, String) - Method in class org.simulator.math.odes.AbstractDESSolver
 
computeDelayedValue(double, String) - Method in interface org.simulator.math.odes.DelayValueHolder
 
computeDelayedValue(double, String) - Method in class org.simulator.sbml.SBMLinterpreter
 
computeDerivatives(double, double[], double[]) - Method in class org.simulator.sbml.SBMLinterpreter
 
computeDoubleValue() - Method in class org.simulator.sbml.astnode.ASTNodeObject
 
computeDoubleValue() - Method in class org.simulator.sbml.astnode.CompartmentOrParameterValue
 
computeDoubleValue() - Method in class org.simulator.sbml.astnode.FunctionValue
 
computeDoubleValue() - Method in class org.simulator.sbml.astnode.NamedValue
 
computeDoubleValue() - Method in class org.simulator.sbml.astnode.ReactionValue
 
computeDoubleValue() - Method in class org.simulator.sbml.astnode.RootFunctionValue
 
computeDoubleValue() - Method in class org.simulator.sbml.astnode.SpeciesReferenceValue
 
computeDoubleValue() - Method in class org.simulator.sbml.astnode.SpeciesValue
 
computeNextState(DESystem, double, double, double[], double[], double[], boolean, boolean) - Method in class org.simulator.math.odes.AbstractDESSolver
 
containsColumn(String) - Method in class org.simulator.math.odes.MultiTable.Block
Checks whether or not this MultiTable.Block contains a MultiTable.Block.Column with the given identifier.
containsEventsOrRules() - Method in interface org.simulator.math.odes.DESystem
 
containsEventsOrRules() - Method in class org.simulator.sbml.SBMLinterpreter
 
containsFastProcesses() - Method in interface org.simulator.math.odes.FastProcessDESystem
 
containsFastProcesses() - Method in class org.simulator.sbml.SBMLinterpreter
 
cos(ASTNodeObject, double) - Method in class org.simulator.sbml.astnode.ASTNodeInterpreterWithTime
 
cos(ASTNode) - Method in class org.simulator.sbml.ASTNodeInterpreter
 
cos(ASTNode) - Method in class org.simulator.sbml.EfficientASTNodeInterpreter
 
cosh(ASTNodeObject, double) - Method in class org.simulator.sbml.astnode.ASTNodeInterpreterWithTime
 
cosh(ASTNode) - Method in class org.simulator.sbml.ASTNodeInterpreter
 
cosh(ASTNode) - Method in class org.simulator.sbml.EfficientASTNodeInterpreter
 
cot(ASTNodeObject, double) - Method in class org.simulator.sbml.astnode.ASTNodeInterpreterWithTime
 
cot(ASTNode) - Method in class org.simulator.sbml.ASTNodeInterpreter
 
cot(ASTNode) - Method in class org.simulator.sbml.EfficientASTNodeInterpreter
 
coth(ASTNodeObject, double) - Method in class org.simulator.sbml.astnode.ASTNodeInterpreterWithTime
 
coth(ASTNode) - Method in class org.simulator.sbml.ASTNodeInterpreter
 
coth(ASTNode) - Method in class org.simulator.sbml.EfficientASTNodeInterpreter
 
createIntegrator() - Method in class org.simulator.math.odes.AdamsBashforthSolver
 
createIntegrator() - Method in class org.simulator.math.odes.AdamsMoultonSolver
 
createIntegrator() - Method in class org.simulator.math.odes.DormandPrince54Solver
 
createIntegrator() - Method in class org.simulator.math.odes.DormandPrince853Solver
 
createIntegrator() - Method in class org.simulator.math.odes.FirstOrderSolver
 
createIntegrator() - Method in class org.simulator.math.odes.GraggBulirschStoerSolver
 
createIntegrator() - Method in class org.simulator.math.odes.HighamHall54Solver
 
csc(ASTNodeObject, double) - Method in class org.simulator.sbml.astnode.ASTNodeInterpreterWithTime
 
csc(ASTNode) - Method in class org.simulator.sbml.ASTNodeInterpreter
 
csc(ASTNode) - Method in class org.simulator.sbml.EfficientASTNodeInterpreter
 
csch(ASTNodeObject, double) - Method in class org.simulator.sbml.astnode.ASTNodeInterpreterWithTime
 
csch(ASTNode) - Method in class org.simulator.sbml.ASTNodeInterpreter
 
csch(ASTNode) - Method in class org.simulator.sbml.EfficientASTNodeInterpreter
 
currentReaction - Variable in class org.simulator.sbml.SBMLinterpreter
This field is necessary to also consider local parameters of the current reaction because it is not possible to access these parameters from the model.

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