Overview
Package
Class
Use
Tree
Deprecated
Index
Help
PREV LETTER
NEXT LETTER
FRAMES
NO FRAMES
All Classes
A
B
C
D
E
F
G
H
I
J
K
L
M
N
O
P
R
S
T
U
V
X
Y
Z
C
c2
- Static variable in class org.simulator.math.odes.
RosenbrockSolver
Constants for solving
c21
- Static variable in class org.simulator.math.odes.
RosenbrockSolver
Constants for solving
c3
- Static variable in class org.simulator.math.odes.
RosenbrockSolver
Constants for solving
c31
- Static variable in class org.simulator.math.odes.
RosenbrockSolver
Constants for solving
c32
- Static variable in class org.simulator.math.odes.
RosenbrockSolver
Constants for solving
c4
- Static variable in class org.simulator.math.odes.
RosenbrockSolver
Constants for solving
c41
- Static variable in class org.simulator.math.odes.
RosenbrockSolver
Constants for solving
c42
- Static variable in class org.simulator.math.odes.
RosenbrockSolver
Constants for solving
c43
- Static variable in class org.simulator.math.odes.
RosenbrockSolver
Constants for solving
c51
- Static variable in class org.simulator.math.odes.
RosenbrockSolver
Constants for solving
c52
- Static variable in class org.simulator.math.odes.
RosenbrockSolver
Constants for solving
c53
- Static variable in class org.simulator.math.odes.
RosenbrockSolver
Constants for solving
c54
- Static variable in class org.simulator.math.odes.
RosenbrockSolver
Constants for solving
c61
- Static variable in class org.simulator.math.odes.
RosenbrockSolver
Constants for solving
c62
- Static variable in class org.simulator.math.odes.
RosenbrockSolver
Constants for solving
c63
- Static variable in class org.simulator.math.odes.
RosenbrockSolver
Constants for solving
c64
- Static variable in class org.simulator.math.odes.
RosenbrockSolver
Constants for solving
c65
- Static variable in class org.simulator.math.odes.
RosenbrockSolver
Constants for solving
ceiling(ASTNodeObject, double)
- Method in class org.simulator.sbml.astnode.
ASTNodeInterpreterWithTime
ceiling(ASTNode)
- Method in class org.simulator.sbml.
ASTNodeInterpreter
ceiling(ASTNode)
- Method in class org.simulator.sbml.
EfficientASTNodeInterpreter
changePriority(double)
- Method in class org.simulator.sbml.
EventInProcess
Change the priority.
checkSolution(double[])
- Method in class org.simulator.math.odes.
AbstractDESSolver
Checks whether or not the given current state contains Double.NaN values.
checkSolution(double[], double[])
- Method in class org.simulator.math.odes.
AbstractDESSolver
children
- Variable in class org.simulator.sbml.astnode.
ASTNodeObject
clearAssignments()
- Method in class org.simulator.sbml.
EventInProcess
clearRuleObjects()
- Method in class org.simulator.sbml.
EventInProcess
clone()
- Method in class org.simulator.math.odes.
AbstractDESSolver
clone()
- Method in class org.simulator.math.odes.
AdamsBashforthSolver
clone()
- Method in class org.simulator.math.odes.
AdamsMoultonSolver
clone()
- Method in interface org.simulator.math.odes.
DESSolver
clone()
- Method in class org.simulator.math.odes.
DormandPrince54Solver
clone()
- Method in class org.simulator.math.odes.
DormandPrince853Solver
clone()
- Method in class org.simulator.math.odes.
EulerMethod
clone()
- Method in class org.simulator.math.odes.
FirstOrderSolver
clone()
- Method in class org.simulator.math.odes.
GraggBulirschStoerSolver
clone()
- Method in class org.simulator.math.odes.
HighamHall54Solver
clone()
- Method in class org.simulator.math.odes.
RosenbrockSolver
clone()
- Method in class org.simulator.math.odes.
RungeKutta_EventSolver
compartmentIndex
- Variable in class org.simulator.sbml.astnode.
RuleObject
CompartmentOrParameterValue
- Class in
org.simulator.sbml.astnode
CompartmentOrParameterValue(ASTNodeInterpreterWithTime, ASTNode, Symbol, ValueHolder, int)
- Constructor for class org.simulator.sbml.astnode.
CompartmentOrParameterValue
compartmentPosition
- Variable in class org.simulator.sbml.astnode.
SpeciesValue
compile(double, int, String)
- Method in class org.simulator.sbml.astnode.
ASTNodeInterpreterWithTime
compile(double, String)
- Method in class org.simulator.sbml.astnode.
ASTNodeInterpreterWithTime
compile(CallableSBase)
- Method in class org.simulator.sbml.
ASTNodeInterpreter
compile(Compartment)
- Method in class org.simulator.sbml.
ASTNodeInterpreter
compile(double, int, String)
- Method in class org.simulator.sbml.
ASTNodeInterpreter
compile(double, String)
- Method in class org.simulator.sbml.
ASTNodeInterpreter
compile(int, String)
- Method in class org.simulator.sbml.
ASTNodeInterpreter
compile(String)
- Method in class org.simulator.sbml.
ASTNodeInterpreter
compile(CallableSBase)
- Method in class org.simulator.sbml.
EfficientASTNodeInterpreter
compile(Compartment)
- Method in class org.simulator.sbml.
EfficientASTNodeInterpreter
compile(double, int, String)
- Method in class org.simulator.sbml.
EfficientASTNodeInterpreter
compile(double, String)
- Method in class org.simulator.sbml.
EfficientASTNodeInterpreter
compile(int, String)
- Method in class org.simulator.sbml.
EfficientASTNodeInterpreter
compile(String)
- Method in class org.simulator.sbml.
EfficientASTNodeInterpreter
compileBoolean(CallableSBase, double)
- Method in class org.simulator.sbml.astnode.
ASTNodeInterpreterWithTime
compileBoolean(double)
- Method in class org.simulator.sbml.astnode.
ASTNodeObject
compileBoolean(ASTNode)
- Method in class org.simulator.sbml.
EfficientASTNodeInterpreter
compileBoolean(double)
- Method in class org.simulator.sbml.
SpecialASTNodeValue
compileDouble(String, double)
- Method in class org.simulator.sbml.astnode.
ASTNodeInterpreterWithTime
compileDouble(CallableSBase, double)
- Method in class org.simulator.sbml.astnode.
ASTNodeInterpreterWithTime
compileDouble(double)
- Method in class org.simulator.sbml.astnode.
ASTNodeObject
compileDouble(double)
- Method in class org.simulator.sbml.astnode.
LocalParameterValue
compileDouble(ASTNode)
- Method in class org.simulator.sbml.
EfficientASTNodeInterpreter
compileDouble(double)
- Method in class org.simulator.sbml.
SpecialASTNodeValue
compileString(ASTNodeObject)
- Method in class org.simulator.sbml.astnode.
ASTNodeInterpreterWithTime
compileString(ASTNode)
- Method in class org.simulator.sbml.astnode.
ASTNodeInterpreterWithTime
computeBooleanValue()
- Method in class org.simulator.sbml.astnode.
ASTNodeObject
computeBooleanValue()
- Method in class org.simulator.sbml.astnode.
FunctionValue
computeChange(DESystem, double[], double, double, double[], boolean)
- Method in class org.simulator.math.odes.
AbstractDESSolver
Computes the change for a given system at the current time with the current setting for the integration step size.
computeChange(DESystem, double[], double, double, double[], boolean)
- Method in class org.simulator.math.odes.
EulerMethod
computeChange(DESystem, double[], double, double, double[], boolean)
- Method in class org.simulator.math.odes.
FirstOrderSolver
computeChange(DESystem, double[], double, double, double[], boolean)
- Method in class org.simulator.math.odes.
RosenbrockSolver
computeChange(DESystem, double[], double, double, double[], boolean)
- Method in class org.simulator.math.odes.
RungeKutta_EventSolver
computeChange(double, double[], double[])
- Method in class org.simulator.sbml.astnode.
StoichiometryObject
computeDelayedValue(double, String)
- Method in class org.simulator.math.odes.
AbstractDESSolver
computeDelayedValue(double, String)
- Method in interface org.simulator.math.odes.
DelayValueHolder
computeDelayedValue(double, String)
- Method in class org.simulator.sbml.
SBMLinterpreter
computeDerivatives(double, double[], double[])
- Method in class org.simulator.sbml.
SBMLinterpreter
computeDoubleValue()
- Method in class org.simulator.sbml.astnode.
ASTNodeObject
computeDoubleValue()
- Method in class org.simulator.sbml.astnode.
CompartmentOrParameterValue
computeDoubleValue()
- Method in class org.simulator.sbml.astnode.
FunctionValue
computeDoubleValue()
- Method in class org.simulator.sbml.astnode.
NamedValue
computeDoubleValue()
- Method in class org.simulator.sbml.astnode.
ReactionValue
computeDoubleValue()
- Method in class org.simulator.sbml.astnode.
RootFunctionValue
computeDoubleValue()
- Method in class org.simulator.sbml.astnode.
SpeciesReferenceValue
computeDoubleValue()
- Method in class org.simulator.sbml.astnode.
SpeciesValue
computeNextState(DESystem, double, double, double[], double[], double[], boolean, boolean)
- Method in class org.simulator.math.odes.
AbstractDESSolver
containsColumn(String)
- Method in class org.simulator.math.odes.
MultiTable.Block
Checks whether or not this
MultiTable.Block
contains a
MultiTable.Block.Column
with the given identifier.
containsEventsOrRules()
- Method in interface org.simulator.math.odes.
DESystem
containsEventsOrRules()
- Method in class org.simulator.sbml.
SBMLinterpreter
containsFastProcesses()
- Method in interface org.simulator.math.odes.
FastProcessDESystem
containsFastProcesses()
- Method in class org.simulator.sbml.
SBMLinterpreter
cos(ASTNodeObject, double)
- Method in class org.simulator.sbml.astnode.
ASTNodeInterpreterWithTime
cos(ASTNode)
- Method in class org.simulator.sbml.
ASTNodeInterpreter
cos(ASTNode)
- Method in class org.simulator.sbml.
EfficientASTNodeInterpreter
cosh(ASTNodeObject, double)
- Method in class org.simulator.sbml.astnode.
ASTNodeInterpreterWithTime
cosh(ASTNode)
- Method in class org.simulator.sbml.
ASTNodeInterpreter
cosh(ASTNode)
- Method in class org.simulator.sbml.
EfficientASTNodeInterpreter
cot(ASTNodeObject, double)
- Method in class org.simulator.sbml.astnode.
ASTNodeInterpreterWithTime
cot(ASTNode)
- Method in class org.simulator.sbml.
ASTNodeInterpreter
cot(ASTNode)
- Method in class org.simulator.sbml.
EfficientASTNodeInterpreter
coth(ASTNodeObject, double)
- Method in class org.simulator.sbml.astnode.
ASTNodeInterpreterWithTime
coth(ASTNode)
- Method in class org.simulator.sbml.
ASTNodeInterpreter
coth(ASTNode)
- Method in class org.simulator.sbml.
EfficientASTNodeInterpreter
createIntegrator()
- Method in class org.simulator.math.odes.
AdamsBashforthSolver
createIntegrator()
- Method in class org.simulator.math.odes.
AdamsMoultonSolver
createIntegrator()
- Method in class org.simulator.math.odes.
DormandPrince54Solver
createIntegrator()
- Method in class org.simulator.math.odes.
DormandPrince853Solver
createIntegrator()
- Method in class org.simulator.math.odes.
FirstOrderSolver
createIntegrator()
- Method in class org.simulator.math.odes.
GraggBulirschStoerSolver
createIntegrator()
- Method in class org.simulator.math.odes.
HighamHall54Solver
csc(ASTNodeObject, double)
- Method in class org.simulator.sbml.astnode.
ASTNodeInterpreterWithTime
csc(ASTNode)
- Method in class org.simulator.sbml.
ASTNodeInterpreter
csc(ASTNode)
- Method in class org.simulator.sbml.
EfficientASTNodeInterpreter
csch(ASTNodeObject, double)
- Method in class org.simulator.sbml.astnode.
ASTNodeInterpreterWithTime
csch(ASTNode)
- Method in class org.simulator.sbml.
ASTNodeInterpreter
csch(ASTNode)
- Method in class org.simulator.sbml.
EfficientASTNodeInterpreter
currentReaction
- Variable in class org.simulator.sbml.
SBMLinterpreter
This field is necessary to also consider local parameters of the current reaction because it is not possible to access these parameters from the model.
Overview
Package
Class
Use
Tree
Deprecated
Index
Help
PREV LETTER
NEXT LETTER
FRAMES
NO FRAMES
All Classes
A
B
C
D
E
F
G
H
I
J
K
L
M
N
O
P
R
S
T
U
V
X
Y
Z