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I

I - Variable in class org.simulator.math.odes.RosenbrockSolver
helper array to hold intermediate values
id - Variable in class org.simulator.sbml.astnode.CompartmentOrParameterValue
 
id - Variable in class org.simulator.sbml.astnode.SpeciesValue
 
inBetweenSteps(double, double, double) - Method in class org.simulator.math.odes.AbstractDESSolver
Computes the number of necessary steps between two time steps.
index - Variable in class org.simulator.sbml.astnode.RuleObject
 
indexMap - Variable in class org.simulator.sbml.astnode.FunctionValue
 
indx - Variable in class org.simulator.math.odes.RosenbrockSolver
helper array to hold intermediate values
init() - Method in class org.simulator.sbml.SBMLinterpreter
This method initializes the differential equation system for simulation.
init(boolean) - Method in class org.simulator.sbml.SBMLinterpreter
 
init(boolean, double, double, double) - Method in class org.simulator.sbml.SBMLinterpreter
 
initialValues - Variable in class org.simulator.sbml.SBMLinterpreter
An array, which stores all computed initial values of the model.
initResultMatrix(DESystem, double[], double, double) - Method in class org.simulator.math.odes.AbstractDESSolver
 
initResultMatrix(DESystem, double[], double, int) - Method in class org.simulator.math.odes.AbstractDESSolver
 
initResultMatrix(DESystem, double[], double[]) - Method in class org.simulator.math.odes.AbstractDESSolver
 
integrator - Variable in class org.simulator.math.odes.FirstOrderSolver
 
interpreter - Variable in class org.simulator.sbml.astnode.ASTNodeObject
 
isCellEditable(int, int) - Method in class org.simulator.math.odes.MultiTable
 
isConstant - Variable in class org.simulator.sbml.astnode.ASTNodeObject
 
isDouble - Variable in class org.simulator.sbml.astnode.ASTNodeObject
 
isIncludeIntermediates() - Method in class org.simulator.math.odes.AbstractDESSolver
 
isIncludeIntermediates() - Method in interface org.simulator.math.odes.DESSolver
If this method returns true, intermediate results that may originate from a RichDESystem are included into the MultiTable that contains the result of a numerical integration.
isInfinite - Variable in class org.simulator.sbml.astnode.ASTNodeObject
 
isName() - Method in class org.simulator.sbml.astnode.ASTNodeObject
 
isNonnegative() - Method in class org.simulator.math.odes.AbstractDESSolver
 
isReactant() - Method in class org.simulator.sbml.astnode.StoichiometryObject
 
isSetData() - Method in class org.simulator.math.odes.MultiTable.Block
Checks whether or not a data matrix has been defined in this object
isSetInitialAmount - Variable in class org.simulator.sbml.astnode.RuleObject
 
isSetInitialAmount - Variable in class org.simulator.sbml.astnode.SpeciesValue
 
isSetInitialConcentration - Variable in class org.simulator.sbml.astnode.RuleObject
 
isSetInitialConcentration - Variable in class org.simulator.sbml.astnode.SpeciesValue
 
isSetTimePoints() - Method in class org.simulator.math.odes.MultiTable
Checks whether an array of time points has been set for this object.
isSpecies - Variable in class org.simulator.sbml.astnode.RuleObject
 
isUnstable() - Method in class org.simulator.math.odes.AbstractDESSolver
 
isUnstable() - Method in interface org.simulator.math.odes.DESSolver
Method to check whether the solution of the numerical integration procedure contains Double.NaN values.
iterator() - Method in class org.simulator.math.odes.MultiTable.Block.Column
 
iterator() - Method in class org.simulator.math.odes.MultiTable
 

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